Treetop: A shiny‐based application and R package for extracting forest information from LiDAR data for ecologists and conservationists

  • Authors: Silva, Carlos Alberto; Hudak, Andrew T.; Vierling, Lee A.; Valbuena, Ruben; Cardil, Adrian; Mohan, Midhun; de Almeida, Danilo Roberti Alves; Broadbent, Eben N.; Almeyda Zambrano, Angelica M.; Wilkinson, Ben; Sharma, Ajay; Drake, Jason B.; Medley, Paul B.; Vogel, Jason G.; Prata, Gabriel Atticciati; Atkins, Jeff W.; Hamamura, Caio; Jonson, Daniel J.; Klauberg, Carine
  • Publication Year: 2022
  • Publication Series: Scientific Journal (JRNL)
  • Source: Methods in Ecology and Evolution
  • DOI: 10.1111/2041-210X.13830

Abstract

1. Individual tree detection (ITD) and crown delineation are two of the most relevant methods for extracting detailed and reliable forest information from LiDAR (Light Detection and Ranging) datasets. However, advanced computational skills and specialized knowledge have been normally required to extract forest information from LiDAR.
2. The development of accessible tools for 3D forest characterization can facilitate rapid assessment by stakeholders lacking a remote sensing background, thus fostering the practical use of LiDAR datasets in forest ecology and conservation. This paper introduces the treetop application, an open-source web-basedand R package LiDAR analysis tool for extracting forest structural information at the tree level, including cutting-edge analyses of properties related to forest ecology and management.
3. We provide case studies of how treetop can be used for different ecological applications, within various forest ecosystems. Specifically, treetop w as e mployed to assess post-hurricane disturbance in natural temperate forests, forest homogeneity in industrial forest plantations and the spatial distribution of individual trees in a tropical forest.
4. treetop simplifies the extraction of relevant forest information for forest ecologists and conservationists who may use the tool to easily visualize tree positions and sizes, conduct complex analyses and download results including individual tree lists and figures summarizing forest structural properties. Through this open-source approach, treetop can foster the practical use of LiDAR data among forest conservation and management stakeholders and help ecological researchers to further understand the relationships between forest structure and function.

  • Citation: Silva, Carlos Alberto; Hudak, Andrew T.; Vierling, Lee A.; Valbuena, Ruben; Cardil, Adrian; Mohan, Midhun; de Almeida, Danilo Roberti Alves; Broadbent, Eben N.; Almeyda Zambrano, Angelica M.; Wilkinson, Ben; Sharma, Ajay; Drake, Jason B.; Medley, Paul B.; Vogel, Jason G.; Prata, Gabriel Atticciati; Atkins, Jeff W.; Hamamura, Caio; Jonson, Daniel J.; Klauberg, Carine. 2022. Treetop: A Shiny‐based application and R package for extracting forest information from LiDAR data for ecologists and conservationists . Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13830.
  • Keywords: airborne LiDAR, change detection, ecology, individual trees, spatial distribution
  • Posted Date: March 14, 2022
  • Modified Date: March 17, 2022
  • Print Publications Are No Longer Available

    In an ongoing effort to be fiscally responsible, the Southern Research Station (SRS) will no longer produce and distribute hard copies of our publications. Many SRS publications are available at cost via the Government Printing Office (GPO). Electronic versions of publications may be downloaded, printed, and distributed.

    Publication Notes

    • This article was written and prepared by U.S. Government employees on official time, and is therefore in the public domain.
    • Our online publications are scanned and captured using Adobe Acrobat. During the capture process some typographical errors may occur. Please contact the SRS webmaster if you notice any errors which make this publication unusable.
    • To view this article, download the latest version of Adobe Acrobat Reader.